Chromosome collinearity analysis
WebNov 16, 2024 · Chromosome rearrangements play an important role in the speciation of plants and animals, and the recognition of chromosome rearrangement patterns is helpful to elucidate the mechanism of species ... WebMar 16, 2024 · Gene collinearity analyses were performed using the MCScanX program [ 65] based on the GFF3 files of Moso bamboo. Genes that lacked placement on major …
Chromosome collinearity analysis
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WebJul 1, 2024 · To investigate genome collinearity with Acyrthosiphon pisum and Rhopalosiphum maidis, MMseq2 v12-113e3 was first used to align protein sequences with “blastp,” with parameters of “s 7.5 –alignment-mode 3 –num-iterations 4 … WebJan 1, 2024 · The results of a collinearity analysis showed that the XTH genes of sweet potato shared evolutionary history with three additional species, including A. thaliana, G. max, and O. sativa. Additionally, based on the transcriptome sequencing data, the results revealed that the IbXTHs have different expression patterns in leaves, stems, the root ...
WebJul 1, 2024 · Genome collinearity analysis. We found a relatively high level of conserved linkage between N. formosana (Nf) and Acyrthosiphon pisum (Ap) genomes, when … WebApr 12, 2024 · The collinearity analysis of the CXE genes of the four cotton species in this family indicated that tandem replication played an indispensable role in the evolution of the CXE gene family. The expression patterns of GBCXE gene under different stress treatments indicated that GBCXE gene may significantly participate in the response to salt and ...
WebSep 15, 2024 · A collinearity analysis showed that EAS1 was orthologous to ECA31 and ECA4, which was consistent with the results of previous research at the molecular cytological level. Moreover, this tandem fusion occurs only in non-caballine equids [6, … WebJul 25, 2024 · Initially, the synteny analysis was elucidated through cytogenetics, comparing the presence or absence of 2 or more loci on a chromosome (Renwick 1971). Now the …
Web2 days ago · Chromosome-length genome assemblies and cytogenomic analyses of pangolins reveal remarkable chromosome counts and plasticity Chromosome Res. 2024 Apr 12 ... We perform the first karyotype analysis of an African pangolin and report a Y-autosome fusion in white-bellied pangolins, resulting in 2n = 113 for males. ...
WebDec 5, 2024 · WGDI supports three main workflows (Figure 1 B): (1) analysis and inference of polyploidy using homologous dotplots, collinearity and Ks distributions, and homologous gene trees; (2) hierarchical inference of genomic homology resulting from recursive paleopolyploidization; and (3) subgenomic and ancestral chromosome karyotyping and … ty batusich baseballWebChromosome location analysis, collinearity and selection pressure analysis showed that many fragment duplication events occurred in GGPS genes. Three-dimensional structure analysis and conservative sequence analysis showed that the members of the GGPS family contained a large number of α-helices and random crimps, and all contained two ... tammy paff medicareWebOct 22, 2024 · Collinearity analysis showed that PtrMFS genes are conserved and homologous to corresponding genes from four other species. Transcriptome data … tybb mean in textWebSep 15, 2024 · Sequence-based comparative genomic analyses are useful for chromosome evolution research. Several previously published chromosome painting … ty-baseWebApr 7, 2024 · We identified nine SUT family members in the whole beet genome. • Their phylogenetic relationships, gene structure, chromosome localization and collinearity … t.y.b.a result of pune universityWebFeb 15, 2024 · The final genome composition is presented in high quality with 893.54 Mb in size (contig N50 = 4.21 Mb, scaffold N50 = 75.55 Mb) and 12 chromosome-scale … tybble restaurang lunchWebCollinearity between a 30-centimorgan segment of Arabidopsis thaliana chromosome 4 and duplicated regions within the Brassica napus genome A.C. Cavell, D.J. Lydiate, I.A.P. Parkin, C. Dean, and M. Trick ... 7.5-Mbp region of the long arm of A. thaliana chromosome 4, equivalent to 30 cM. Estimates of copy number indicated that sequences present ... tybas dance center